MaxEntScan
To score 5’splice site 9-mers using different 5'ss models
http://hollywood.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html
To score 3’splice site 23-mers using different 3’ss models
http://hollywood.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq_acc.html
ExSkip
EX-SKIP is simple utility that compares the ESE/ESS profile of a wild-type and a mutated allele to quickly determine which exonic variant has the highest chance to skip this exon.
ESE-finder
Prediction of ESE sequences based on SELEX data
http://krainer01.cshl.edu/cgi-bin/tools/ESE3/esefinder.cgi?process=home