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Instrumentation

Biological mass spectrometry platform

  • Orbitrap Q-Exactive HF (3X) (ThermoFisher Scientific) for functional proteomics
  • Orbitrap Fusion Tribrid / ETD (2X) (ThermoFisher Scientific) for protein/proteome analysis
  • Orbitrap Fusion Tribrid (ThermoFisher Scientific) for lipid/lipidome analysis
  • UltraFlextreme TOF-TOF w/ imaging MALDI setup (upgrade, Bruker)
  • LTQ-Orbitrap Velos Pro (2 x upgrade, ThermoFisher Scientific)
  • Capillary liquid chromatography systems (ThermoFisher Scientific Dionex and Proxeon)
  • Spectroglyph MALDI/ESI injector (ion source)
  • Thermo QE HF-X orbitrap mass spectrometer

Advanced microscopy/imaging platform

  • Confocal Microscope for STED and CARS (Leica TCS SP8)
  • CM1860 Cryostat (Leica)

Macromolecular/cellular interactions research platform

  • DelsaMAX Core, Dynamic Light Scattering (Beckman-Coulter)
  • FACSaria III Fluorescence-activated cell sorting (BD)
  • Surface plasmon resonance analyzer (IBIS)
  • 600 MHz NMR spectrometer (Agilent)

Metabolomics platform

  • LC-MS/MS system (Agilent QTOF)
  • GC-MS/MS system (Agilent QTOF)

Next generation nucleic acid sequencing platform

  • HiSeq 1500 sequencerv4 upgraded (Illumina)
  • rtPCR systems (Roche)
  • Biomek 4000 Robotic sample preparation station (BD)
  •  Chromium Single Cell 3′ Solution (10x Genomics)

Computing, data analysis and modelling infrastructure

  • Storage 125TB
  • Computing server for genomics/proteomics
  • Several computer workstations
  • Software for integrative data analysis (Ingenuity Pathway Analysis, MetaCore, Schrödinger, Progenesis, Mascot, PEAKS, etc.)
  • NetApp 2 x 220 TB storage system

Last Updated 10.08.2023